[gridengine users] using openmpi for inter-node parallel computing

wzlu wzlu at gate.sinica.edu.tw
Thu Mar 31 01:14:50 UTC 2011


於 2011/3/30 下午 06:50, Dave Love 提到:
> wzlu<wzlu at gate.sinica.edu.tw>  writes:
>
>> My script as following:
>> #$ -S /bin/sh
>> #$ -q q0-em64t-ge
>> #$ -pe mpich 2
>> #$ -v
>> OMPI_MCA_pls_gridengine_verbose=1,OMPI_MCA_plm_rsh_agent=rsh,LD_LIBRARY_PATH=/usr1/wzlu/openmpi/1.4.3/lib:/lib64:/lib:/usr/lib64:/usr/lib
> You definitely don't want to set plm_rsh_agent.  Did some documentation
> suggest that?  Your mpich PE may or may not be appropriate.  It should
> have:
>
> start_proc_args    NONE
> stop_proc_args     NONE
> control_slaves     TRUE
> job_is_first_task  FALSE

Thanks for your reply.
Because I want the parallel job using rsh to communication, it will be 
easily for my user to setting their environment.

Do I need to change the configuration of PE?
My PE configuration as following:
pe_name mpich
slots 4096
user_lists NONE
xuser_lists NONE
start_proc_args /bin/true
stop_proc_args /bin/true
allocation_rule $round_robin
control_slaves FALSE
job_is_first_task FALSE
urgency_slots min

Best Regards,
Lu



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