[gridengine users] Using Galaxy with SGE: Job output not returned from Cluster
reuti at staff.uni-marburg.de
Mon Jul 9 16:20:47 UTC 2012
Am 09.07.2012 um 17:37 schrieb Sascha Kastens:
> I have a very special problem and posted it to the Galaxy mailing list already.
> Unfortunately I have not received any response yet. So this list is my last hope.
> Maybe I can find somebody in this list who uses Galaxy too or at least knows where
> I can look at.
> Thank you for your help in advance. If you need any further information please let me know!
> Hi all,
> I have exactly the same problem as described here: http://gmod.827538.n3.nabble.com/Job-output-not-returned-from-cluster-td879580.html
Did you try to contact the original poster about their solution (you can click the name in the link you posted)? It would have been good if he would have stated the solution though, not just only that it was fixed.
SGE doesn't transfer any files on its own. So I could assume that Galaxy is getting some erroneous information from SGE and couldn't complete the transfer.
> All the SGE stuff is administrated in our company and unfortunately they know nothing about
> Galaxy and so it’s my task to get it running. Everything works fine except the problem mentioned
> I’ve contacted Erick but haven’t received a response yet. If anybody can give me some hints where I
> can look at to solve the problem or at least what I can tell the admins, I would be really grateful.
> Thanks in advance. If you need further information let me know!
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