[gridengine users] problem with output format of scripts run by the queue

Reuti reuti at staff.uni-marburg.de
Thu May 23 09:11:24 UTC 2013


Am 23.05.2013 um 09:31 schrieb Semi:

> Any idea?
> 
> From: Inbar
> Sent: Thursday, May 23, 2013 9:58 AM
> 
> Recently I have encountered a problem with output format of scripts run by the queue
> The output files are generated with a ? at the end of their names
> 
> For instance, submitting the attached csh script using the command :

There is no script attached.

-- Reuti


> qsub -cwd -q bioinfo.q /fastspace/bioinfo_projects/Rivki_Ofir/08.HT_seq/htseq_count.csh
> 
> yielded the output with the following name:
> 
> htseq_out_T1.txt?
> 
> am I doing something wrong?
> 
> This is not the only script that it happened with , how can I fix that problem?
> 
> Best regards
> 
> Inbar
> 
>  
>  
>  
> 
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