[gridengine users] error: fopen("/opt/sge/default/common/bootstrap") failed: No such file or directory

Skylar Thompson skylar2 at u.washington.edu
Tue Jun 2 16:18:24 UTC 2015


Rebuilding the bootstrap file is easy, but possibly unnecessary. You should
find out why bootstrap no longer exists - did it live there before?

On Tue, Jun 02, 2015 at 11:15:32AM -0500, Dan Hyatt wrote:
> is it easier to rebuild the bootstrap file?
> Or restore it from tape (assuming the other group is backing it up as 
> requested).
> 
> Dan
> 
> On 06/02/2015 11:05 AM, Skylar Thompson wrote:
> > Did your SGE_ROOT and/or SGE_CELL environment variable settings change? All
> > the GE binaries expect to find the bootstrap file at
> > ${SGE_ROOT}/${SGE_CELL}/common. I suspect that the settings changed, and
> > your bootstrap file actually lives elsewhere.
> >
> > On Tue, Jun 02, 2015 at 10:51:58AM -0500, Dan Hyatt wrote:
> >>
> >> I was trying to add some new exec nodes, and now my qstat and qsub on my
> >> master is giving this error.
> >>
> >> error: fopen("/opt/sge/default/common/bootstrap") failed: No such file
> >> or directory
> >>
> >>
> >> When I go to that directory, the bootstrap file does not exist.
> >>
> >> What did I do and how do I recover?
> 

-- 
-- Skylar Thompson (skylar2 at u.washington.edu)
-- Genome Sciences Department, System Administrator
-- Foege Building S046, (206)-685-7354
-- University of Washington School of Medicine



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