[gridengine users] How to specify the core number for the multiple thread program in one queue?

Christopher Black cblack at nygenome.org
Thu Jan 5 18:21:47 UTC 2017


Normally your cluster would have some PEs (parallel environments) set up. Common ones are “smp” or “make”. You can use qconf –spl to list the ones configured on your cluster.
A common commandline pattern for us is specifying cores like:
qsub –pe smp 6

Best,
Chris

On 1/5/17, 1:14 PM, "users-bounces at gridengine.org on behalf of Jin Li" <users-bounces at gridengine.org on behalf of lijin.abc at gmail.com> wrote:

    Hi all,

    I have one multiple thread program using 6 threads. I want to submit
    this program to a queue ( where the host has more than 6 cores). What
    is the option I need to specify for the core number when submitting
    the job to the queue? Thanks for your help.

    Best regards,
    Jin
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