[gridengine users] Possible opportunity for development work

Daniel Povey dpovey at gmail.com
Mon May 14 17:37:28 UTC 2018


Thanks for that info RE the code.

FWIW, we have set up GPU resources the same in our cluster, and
haven't run into that bug.

I wonder if deleting that execution host and adding it back again
might work around your issue.

Dan


On Mon, May 14, 2018 at 12:52 PM, Joshua Baker-LePain <jlb at salilab.org> wrote:
> On Sun, 13 May 2018 at 8:49pm, Daniel Povey wrote
>
>> Can you show the full output from when you do `qstat -j <job-id>` for
>> the job that's pending?
>
>
> Unfortunately I had to change our setup so that GPU jobs would actually flow
> through the queues -- we're no longer using a consumable gpu complex. Our
> current setup, though, is far from perfect, which is why we're looking to
> help get this fixed.
>
> In this <http://gridengine.org/pipermail/users/2018-April/010120.html>
> message from the previous thread I mention that the 'qstat -j' output is
> unremarkable.  It details all the queues the job can't run in (all for
> legitimate reasons).  It's also notable that 'qalter -w p' always said
> "verification: found possible assignment with 5 slots" when jobs got stuck
> in this state.
>
>
> --
> Joshua Baker-LePain
> QB3 Shared Cluster Sysadmin
> UCSF



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